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Showing 1 to 34 of 34 items tagged as biomedical research


JoVE (Journal of Visualized Experiments)

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Descriptions: JoVE is a peer-reviewed scientific video journal. It is published in sections, of which the library subscribes to four: Biology, Clinical and Translational Medicine, Immunology and Infection, and Neuroscience. Videos are accompanied by text.
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EMBASE

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Provider: Elsevier
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Descriptions: EMBASE is a comprehensive index to peer-reviewed biomedical literature with international scope, covering 1947-present. EMBASE indexes more than 2,700 journals not covered by PubMed/Medline and includes about 300,000 conference abstracts annually from 2009 to the present. EMBASE combines its own ontology, EMTREE, with that of Medline, so that more of the relevant search results are retrieved in a search. EMBASE is an ideal resource for preparing systematic reviews and tracking drug and medical device information. Supported: IE8, 9 and 10; latest versions of Firefox, Safari and Chrome; Windows XP, Vista and 7, and latest OS X version.
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International Neuroinformatics Coordinating Facility (INCF)

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Provider: International Neuroinformatics Coordinating Facility
Descriptions: INCF develops and maintains database and computational infrastructure for neuroscientists. Software tools and standards for the international neuroinformatics community are developed through INCF programs that address infrastructural issues of high importance to the neuroscience community. INCF collects and makes available neuroinformatics tools in the INCF Software Center, where anyone can upload documentation, executables and related files, track use of their software, create a wiki, and establish development teams. Two of the most popular INCF products are Waxholm Space and MUSIC, which are direct outcomes of the INCF Program on Digital Atlasing and Multi-Scale Modeling, respectively. INCF also arranges Scientific Workshops and holds an annual neuroinformatics conference.
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BioMedSearch.com

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Provider: BioMedSearch.com
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Descriptions: BioMedSearch combines Medline/PubMed citations with data from other sources- dissertations, theses, practice guidelines-  with the aim of creating the most comprehensive biomedical literature search available. Free registration gives the user access to advanced account features: saved searches, alerts, saving documents to portfolios, commentary and sharing of documents with other registered users. Registration is unnecessary for searching without advanced features. This search engine also provides grouped subject clusters and sub-clusters for refinement of results, and detailed syntax instructions and record field abbreviations for use in Advanced search mode. Browser plug-ins are supplied for Chrome, Firefox and Internet Explorer.
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GenomeNet

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Provider: Kyoto University Bioinformatics Center
Descriptions: GenomeNet is a network of database and computational services for genome research and related research areas in biomedical sciences, operated by the Kyoto University Bioinformatics Center. The service was first developed at Kyoto University as part of a group of research projects begun in 1991 under the Japanese human genome program. It includes bioinformatics tools in sequence, chemical and genome analysis; community databases dealing with cyanobacteria, bacillus subtilis, and gene expression profiles; ontologies; and more. The KEGG database, which has its own entry in this list, is a part of GenomeNet.
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From Birth to Death and Bench to Clinic: The Hastings Center Bioethics Briefing Book

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Provider: The Hastings Center
Descriptions: This online book from the Hastings Center is the collaborative effort of various Hastings Center writers and outside journalists. The Bioethics Briefing Book "seeks to inform debate surrounding thirty-six of the most controversial bioethics topics in the media today." Each chapter begins with an entry highlighting the debated points of the issue, and a comprehensive overview of its various facets follows. Links to information on relevant legislation, 2008 Presidential campaign and party platform positions and links to websites, news items and further reading resources are provided. A few of the topics covered are: gene patents; family-provided long-term care; nanotechnology; abortion; organ transplantation; and stem cells. This book is offered as a free download in .pdf format.
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Flu.gov

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Provider: U.S. Department of Health and Human Services
Descriptions: This DHHS (U.S. Department of Health and Human Services) website presents a wealth of information on the Avian and Swine Influenzas. This is, as the site declares, "one stop access to U.S. Government swine, avian and pandemic flu information." The site provides sections on: planning and preparation, from government to family level; tests, vaccines and medications; bird and animal issues; research activities; global activities; news and multimedia resources; economic impacts; and links to state government websites and contacts.
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Whole Brain Catalog

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Provider: Whole Brain project - UC-San Diego
Descriptions: The Whole Brain Catalog is the flagship project of the Whole Brain Project at the University of California - San Diego. It is an open source, downloadable, multi-scale virtual catalog of the mouse brain and its cellular components, providing zoomable 3D views of structures and their surroundings deep inside the mouse brain. The data is also brought to life with simulation and animation. "In providing open source and collaborative tools, the Whole Brain Project allows neuroscience researchers to make new connections with collaborators and newly discovered data. Combining previously unconnected databases across a single network make possible new and exciting insights about the brain."
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F1000 Posters

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Provider: F1000
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Descriptions: F1000Posters is an open-access repository of posters and slides in biology and medicine. Most are the normally ephemeral products of conference presentations, representing preliminary, unpublished research. F1000 gives this valuable and unique work a permanent home and makes it a resource for all. This provides a mutual benefit for authors and the scientific community, affording an opportunity to share findings and thus further develop ideas and research. More than 5,000 posters have been deposited here as of 2013, in a wide range of biological and medical fields and specialties. Also includes a list of upcoming conferences.
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Wiley Online Library

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Provider: John Wiley & Sons, Inc.
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Descriptions: This is the interface for hundreds of Wiley e-journals and e-books, including  Current Protocols . NOTE: The TMC Library subscribes to the Current Protocols in... Immunology; Molecular Biology; NeurologyProtein Science; and Stem Cell Biology.
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DataCite

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Provider: DataCite
Descriptions: DataCite is an international organization established in December, 2009 to promote and facilitate the expansion of the DOI (Digital Object Identifier) system to include scientific datasets. Membership includes publishers, libraries and data centers. Researchers will benefit from access to scientific data supporting findings explicated in full-text articles, and will be able to link to that underlying data in the same way DOI enables links to text. DataCite provides standards and workflows for the publication of this data, and enables researchers to reliably locate and cite submitted data.
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Catalog of Federal Domestic Assistance

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Provider: U.S. General Services Administration/U.S. Government Printing Office
Descriptions: This is a primary starting point for locating appropriate federal grant funding. This website, in addition to being the primary format of the Catalog, also offers an FAQ and guidance on writing grant applications.
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Biomedical Beat: a monthly digest of of research news from NIGMS

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Provider: National Institute of General Medical Sciences/National Institutes of Health
Descriptions: This is a biomedical sciences newsletter on NIGMS-funded research. This National Institutes of Health division funds research in the following areas: cell biology, biophysics, genetics, developmental biology, pharmacology, physiology, biological chemistry, bioinformatics and computational biology. Links to sections on research funding opportunities, free publications, and training and other educational grants are made accessible in tabs. In addition, an image library is provided. The newsletter is not copyrighted; articles may be freely reproduced elsewhere; re-use of images requires permissions. This newsletter offers RSS feed access.
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Biographical Memoirs – National Academy of Sciences

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Provider: National Academy of Sciences
Descriptions: This website provides very complete biographical articles on deceased scientists and their work, including extensive bibliographies.
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NCMIR – National Center for Microscopy and Imaging Research

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Provider: National Center for Microscopy and Imaging Research/University of California San Diego
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Descriptions: NCMIR develops technologies to facilitate understanding of biological systems from the gross anatomical to the molecular scale and makes those technologies available to biomedical researchers. NCMIR provides expertise, infrastructure, technological development, and an environment in which new information about the 3D ultrastructure of tissues, cells, and macromolecular complexes can be easily obtained and analyzed.
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Science.gov

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Provider: usa.gov
Descriptions: Science.gov searches over 36 databases and 1,850 selected websites, offering 200 million pages of authoritative U.S. government science information, including R&D results.
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Profiles in Science

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Provider: National Library of Medicine
Descriptions: This collection from the National Library of Medicine provides biographical, career and bibliographic information on a selection of scientists in the medical and biomedical fields.
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PRIM&R: Public Responsibility in Medicine & Research

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Provider: Public Responsibility in Medicine and Research
Descriptions: Via publications and press releases, accreditation, education and networking activities funded through memberships, this organization promotes the ethical treatment of human and animal research subjects. Some of the white papers and general information are freely accessible, but much of the site is restricted to PRIM&R members.
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Office of Rare Diseases Research

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Provider: National Institutes of Health
Descriptions: "The ORDR [Office of Rare Diseases Research] Web site aims to answer questions about rare diseases and the activities of the ORDR for patients, their families, healthcare providers, researchers, educators, students, and anyone with concern for and interest in rare diseases. The site provides information about ORDR-sponsored biomedical research, scientific conferences, and rare and genetic diseases. It also serves as a portal to information on major topics of interest to the rare diseases community."
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NIH VideoCasting and Podcasting

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Provider: Center for Information Technology, National Institutes of Health
Descriptions: This is a service of the NIH's Center for Information Technology, a growing, searchable collection of National Institutes of Health and Health and Human Services streaming videos and podcasts. Thousands of lectures (including some Grand Rounds), meetings and special events are made available here. Most are open for worldwide public viewing (RealPlayer required.) A minority are restricted to agency employees and clearly marked as such. Lectures and events are also presented live via this site. Reading the FAQ section and testing before playing to an audience is advised. These presentations average about an hour in length and span a wide array of topics.
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NextBio

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Provider: NextBio
Descriptions: NextBio Basic is a free web application providing access to a 'curated, correlated database' of public data which also integrates literature, clinical trials and scientific news. Its semantic framework is based on gene, tissue, disease and compound ontologies. A single search for information on a gene yields results categorically arranged on a single page: an overview of the gene's functions; a list of tissues in which the gene is expressed; diseases and compounds relating to the gene; a list of the top topic-associated researchers and authors; literature, associated clinical trials, and more. Registered users of this application (registration for this basic version is free) can personalize their experience, communicate, collaborate and share data with the rest of the NextBio community.
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Neuroscience Information Framework 3.1

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Provider: National Institutes of Health
Descriptions: The Neuroscience Information Framework (NIF) is a semantically-enhanced portal to a dynamic inventory of Web-based neuroscience resources. An initiative of the NIH Blueprint for Neuroscience Research, NIF enhances discovery and access to often unindexed but publicly available research data, datasets, software and tools in the deep web, as well as linking to PubMed records and open-access literature. The NIF Project provides the NIF Registry, Antibody Registry, Drug Related Gene Database, neuroscience ontology and a way to contribute to it (via the NeuroLex wiki) and semantic tagging services. NIF Navigator, a customizable, stand-alone search tool for incorporation into websites or wikis, draws query results from all the NIF's own components and from other sites and accessible databases. The valuable resources at NIF are too numerous to be described adequately here.
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NBIC (Netherlands BioInformatics Centre)

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Provider: Netherlands BioInformatics Centre
Descriptions: NBIC is engaged in bioinformatics research and education. Its website includes free software downloads, information on databases and projects, a journal and newsletter, and secondary-level education materials.
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National Institute of General Medical Sciences (NIGMS)

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Provider: NIGMS - National Institute of General Medical Sciences
Descriptions: "The mission of [NIGMS] is to support research that increases understanding of life processes and lays the foundation for advances in disease diagnosis, treatment, and prevention." NIGMS provides training and career grants, including a grants and opportunities program for minorities. This website is a gold mine for educators, providing scientist interviews, short films on special topics, an image database, posters, fact sheets, even interactive games. One can access or sign up for Biomedical Beat, the free NIGMS online newsletter, as well as order many other free publications. For researchers there is a blog, NIGMS Feedback Loop, that keeps one up to date on funding opportunities and future plans.
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GoPubMed

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Provider: Transinsight
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Descriptions: GoPubMed is an innovative, powerful search tool that combines the MeSH (Medical Subject Headings) and GO (Gene Ontology) terminologies to optimize the effectiveness of queries to PubMed- for everyone, but for molecular biologists in particular. Searching elicits results presented very quickly (maximum display: the most recent 1,000 citations), along with a sidebar presenting the full results in categorized, hierarchical groups of terms that help the user to focus in further- the producers of this search engine refer to it as a "knowledge-based semantic search." There are many more features to this search tool than can be described here.
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Frontiers

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Provider: Frontiers
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Descriptions: Frontiers was launched in 2007 by scientists from the Swiss Federal Institute of  Technology in a grassroots initiative.  Frontiers is an open-access, scholarly, primarily scientific publisher, producing 26 community-driven journals with growing impact factors, and with more than 25,000 high-impact researchers on its editorial boards. Frontiers is notable for a democratic system of peer review, the details of which can be examined under the "About" section. Authors with accepted articles who demonstrably cannot bear the cost of publication can apply to the Frontiers Research Foundation for a grant to waive some or all author fees. Waivers are dependent on the World Bank economic status of the author's country. Many video lectures are posted in a keyword-searchable, subject-browse interface. Read abstracts of about 180 downloadable e-books, which can be purchased for a negligible fee. The Frontiers Community part of the site is home to an image bank, an international conference/events schedule, a blogging platform with numerous active blogs, and a jobs board. Authors, editors and reviewers come from prestigious institutions worldwide, many of them from the Texas Medical Center. To participate in the networking components, Frontiers Research Network and Frontiers Community, complete the free online registration form. Maintain contact and receive alerts via almost any social networking tool or via RSS feed. Many TMC researchers participate.
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NanoHub.org

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Provider: Network for Computational Nanotechnology
Descriptions: Supported by the National Science Foundation, this site is designed for and by the nanotech research community, providing tools and support for nanotech theory, modeling and simulation, and a forum in which to share knowledge within and between different nanotech research areas. This site is also a good resource for teachers, supplying curriculum items in the form of images, videos and learning modules.
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BIOSIS – Biological Abstracts, 1980 – 2003

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Provider: Ovid
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Descriptions: BIOSIS encompasses the breadth of life sciences and provides coverage of published biological and biomedical research; includes traditional areas of biology, such as botany, zoology and microbiology, as well as experimental, clinical and veterinary medicine, biotechnology, environmental studies, and agriculture. Interdisciplinary fields like biochemistry, biophysics and bioengineering are also included. The Library's coverage ends with 2003. For a brief guide to searching any Ovid database, access the full list of available databases by clicking "Change Databases," and click the "i" (information) logo next to its title.
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BioMed Central

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Provider: BioMed Central
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Descriptions: BioMed Central is a Science, Technology and Medicine (STM) publisher of more than 250 peer-reviewed open access journals. The journals here cover many specialty areas of biology, biomedicine and medicine and include broad interest titles as well.  All original research articles published by BioMed Central are freely accessible online upon publication. Other content in a minority of the journals is subscription-based. Articles labelled Open Access are immediately and permanently available online. Unrestricted use, distribution and reproduction in any medium is permitted, provided the article is properly cited. See BioMed Central's open access charter. Search BioMed Central by journal, or browse by article.
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DrugBank: Open Data Drug & Drug Target Database

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Provider: David Wishart/University of Alberta, CA
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Descriptions: A bio- and chemical informatics resource that combines detailed drug (chemical, pharmacological and pharmaceutical) data with comprehensive drug targeting (sequence, structure, and pathway) information. The database contains nearly 4300 drug entries, including FDA-approved small molecule drugs, FDA-approved biotech (protein/peptide) drugs, "nutraceuticals" and experimental drugs. Contains more than 6,800 drug entries with almost 4,300 non-redundant protein sequences linked. Each entry, or  DrugCard, contains more than 80 data fields, half of which are devoted to drug/chemical data and the other half to drug target/protein data. Downloads and information on rights, acknowledgement and usage are available here.
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Alzforum (Alzheimer Research Forum)

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Provider: Alzheimer Research Forum
Descriptions: This site contains and links to a huge number of resources for the Alzheimer researcher. Features include: a live discussion forum; citations to the latest papers (linking to PubMed); an international listing of institutes and laboratories; separate links for news on drugs, conferences and research; clinics information for the consumer; and more items too numerous to list here. It also provides links to the AlzSWAN Knowledge Base (see separate website listing) and its tutorials, and a collection of special seminars, on-line journal club discussions, recorded talks and other presentations that describe a variety of scientific hypotheses about the pathogenesis of Alzheimer's disease.
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PubMed

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Provider: National Library of Medicine
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Descriptions: PubMed is a database providing abstracts to articles in medicine, nursing, dentistry, veterinary medicine, allied health, and the pre-clinical sciences; it also indexes articles from the Index to Dental Literature and the International Nursing Index. PubMed is a service of the US National Library of Medicine and includes millions of citations from health and life sciences journals from the present back to the 1950s. PubMed, when accessed by registered Academic users via The TMC Library, links the user to the full text of thousands of articles in subscribed journals. For all who access it, PubMed also links to thousands of open-access articles, either directly via publisher sites or via its PubMed Central repository.
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Current Protocols

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Provider: John Wiley & Sons
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Descriptions: Users have access to the following laboratory protocols via the TMC Library:


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Scopus

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Provider: Elsevier
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Descriptions: The SCOPUS database contains millions of records from 10,150 life and health sciences publications (including all journals contained in Medline and EmBase) and includes most other sciences and humanities-- coverage of 20,450 journal titles. SCOPUS also indexes the proceedings of 750 conferences.  Searching also pullsl in relevant Web resources, organized under a separate tab. Another tab separates patent results from patent offices in the US and worldwide. SCOPUS provides a Journal Analyzer tool that graphs journals, singly or for comparison, from 1996 to present, showing total citations, number of articles published, total cites divided by number of articles, and the percentage of non-cited articles. Affiliation searching is also provided. A free login for authorized users provides additional advantages: a customizable personal profile for saving citation lists and tracking authors; a publication alert service; and direct export to RefWorks. For SCOPUS's tutorials, click here.  NOTE: Scopus may not support Safari and will cease to support IE7 in September 2014. From the website: "In order for our users to continue benefitting from Scopus’ new features and functionalities, we recommend that you upgrade your browser to IE 8 or higher or use Google Chrome or Firefox browsers."
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