Date: Tuesday, November 21, 2017
Time: 6:30pm – 7:30pm
Presenter: Emmanuel Onwuachi
Location: Second Floor Temporary Classroom
This class focuses on using PubMed tags (filters) to narrow and add specificity to one’s PubMed searches.
Provider: Cold Spring Harbor Laboratory Press
Contents: Abstracts, full text, protocols
Access Level: Licensed, On-Site Visitor, TMC Academic User
Descriptions: Cold Spring Harbor Protocols is an interdisciplinary journal providing step by step, peer-reviewed research methods in cell, developmental and molecular biology, genetics, bioinformatics, protein science, computational biology, immunology, neuroscience and imaging. Included is an Alphabetical List of Recipes, listing materials needed for each protocol.
Keywords: bioinformatics, cell biology, developmental biology, genetics, immunology, molecular biology, neuroscience, protein science, research methods
Provider: Springer Science & Business Media LLC
Contents: E-books, full text, handbook, images, journals, links, links to full text, mobile access, protocols, video
Access Level: Licensed, On-Site Visitor, Partially Open, TMC Academic User
Descriptions: SpringerProtocols is said to be the most comprehensive and trustworthy online database of reproducible laboratory protocols in the biomedical and life sciences. From the book series Methods in Molecular Biology and numerous other sources, this collection offers researchers access to decades of step-by-step protocols for use in the lab. With an emphasis on clarity, each protocol is organized in an easily-reproduced, recipe style. All protocols have been written by experts in the field, and are reviewed first by editors distinguished in the relevant specific subject areas, and then by Springer's own editorial staff. Contains some open-access protocols. Mobile version of website available.
Keywords: assay, bioassay, bioinformatics, biotechnology, cell biology, genetics, genomics, immunology, infectious diseases, laboratory methods, microbiology, molecular medicine, neuroscience, pharmacology, plants, proteins, protocols, radiology
Provider: Dolan DNA Learning Center, Cold Spring Harbor Laboratory
Descriptions: Genes to Cognition (G2C) Online examines thinking and disorders of thinking across six levels of analysis: Genes ~ Biochemicals ~ Cells ~ Brain ~ Cognition (Behavior) ~ Environment. This interactive resource focuses on cognitive disorders, cognitive processes, and research approaches. A dynamic map of a network of connected topics facilitates exploration of a library of more than 750 unique items. A linear Selected Items menu above each map can be used to tour selected content. Links to other sites, to video short lectures and to news items are included. This site also has a blog. Note: Adobe FlashPlayer required for full use.
Keywords: anatomy, animation, biomedical ethics, blog, brain mapping, genetics, images, links, neurology, neuroscience, news, physiology, video
Descriptions: The Gene Gateway is a collection of guides and tutorials for the investigation of various aspects of genetics data and information through databases located on the Worldwide Web. Guide sections include links to the resources, and are as follows: Gene and Protein Database Guide; Bioinformatics Tools; Genetic Disorder Guide; Sample Profiles of Genes and Genetic Disorders; Chromosome Viewer; and Evaluating Medical Information on the Web.
Keywords: consumer health, faculty, federal agencies, gateway, genetics, genome, portal, research, student, U.S. Government
Provider: Johns Hopkins University School of Medicine
Contents: brief records, index, links, links to full text
Access Level: Free, Open Access, Partially Open
Descriptions: OMIM is a comprehensive, authoritative compendium of human genes and genetic phenotypes that is freely available and updated daily. The full-text, referenced overviews in OMIM contain information on all known mendelian disorders and over 12,000 genes. OMIM focuses on the relationship between phenotype and genotype. It is updated daily, and the entries contain copious links to other genetics resources. Registration required for ftp downloading on the part of nonprofit entities; commercial use/use by a commercial entity requires a license.
Keywords: diseases, genetics, genome, genomics
Provider: National Institute of General Medical Sciences/National Institutes of Health
Descriptions: This is a biomedical sciences newsletter on NIGMS-funded research. This National Institutes of Health division funds research in the following areas: cell biology, biophysics, genetics, developmental biology, pharmacology, physiology, biological chemistry, bioinformatics and computational biology. Links to sections on research funding opportunities, free publications, and training and other educational grants are made accessible in tabs. In addition, an image library is provided. The newsletter is not copyrighted; articles may be freely reproduced elsewhere; re-use of images requires permissions. This newsletter offers RSS feed access.
Keywords: biomedical research, cell biology, disease, education, genetics, grants, images, news, pharmacology, research, RSS feed, U.S. Government
Provider: Baylor College of Medicine
Descriptions: BioEd Online is an award-winning life sciences educational resource from Baylor's Center for Educational Outreach. Designed for teachers and their students from elementary to high school level, it contains engaging multimedia teaching and course materials, including lesson demonstrations, on genetics, neuroscience, viruses, environmental science and more topics. Resources include a library of downloadable slide sets, as well as videos, podcasts and .pdf teaching guides. BioEd Online is edited by a distinguished group of Baylor College of Medicine faculty and staff, and funded by NIH Blueprint for Neuroscience Education and others. The website also features a series of video presentations for K-8 students on life science experiments in space, funded by NASA and sponsored by the National Space Biomedical Research Institute. Although all courses are free to HISD teachers and Baylor-affiliated faculty and staff after obtaining a log-in, full access to some requires a subscription for other users. Teacher contact-hour certification available for more advanced courses.
Keywords: Baylor, biology, brain, communicable diseases, continuing education, courseware, education, environmental, faculty, full text, genetics, Internet, K-12, life sciences, natural sciences, neuroscience, news, NIH, partial open access, podcasts, science, student, video
Provider: Nature Education
Descriptions: Scitable is a free website with international participation; its current focus is on all aspects of genetics. Created for educators and students working at the graduate and undergraduate levels, it may well be accessible enough for some high school students. Includes many free articles within "topic rooms," and offers blogging, the ability to post questions, opportunities to contribute as writer or mentor, and formation of groups for discussion or curriculum. Free registration required for full participation.
Keywords: blog, courseware, education, faculty, genetics, genomics, science, student
Provider: U.S. Department of Health and Human Services/Stanford University
Descriptions: PharmGKB's mission is "to collect, encode, and disseminate knowledge about the impact of human genetic variations on drug response. We curate primary genotype and phenotype data, annotate gene variants and gene-drug-disease relationships via literature review, and summarize important PGx genes and drug pathways."
Keywords: clinical studies, collaborative, database, dosage, drug pathways, drugs, figures, free, genetics, genomics, genotype, images, pharmacogenomics, pharmacokinetics, phenotype, research, scientist
Provider: National Institutes of Health
Descriptions: "The ORDR [Office of Rare Diseases Research] Web site aims to answer questions about rare diseases and the activities of the ORDR for patients, their families, healthcare providers, researchers, educators, students, and anyone with concern for and interest in rare diseases. The site provides information about ORDR-sponsored biomedical research, scientific conferences, and rare and genetic diseases. It also serves as a portal to information on major topics of interest to the rare diseases community."
Keywords: biomedical research, clinical studies, consumer health, disease, gateway, genetics, patient education, U.S. Government
Provider: U.S. Census Bureau
Descriptions: Contains population, economic, housing and geographic data based on the latest Decennial Census. Includes interactive maps, downloadable summaries, reports and useful links to related information.
Keywords: census, data, demographics, general reference, genetics, multicultural, population, society, statistical, U.S. Government
Provider: Gene Ontology Project
Contents: datasets, open-source, standards, websites
Access Level: Free, Open Access
Descriptions: "The Gene Ontology project is a major bioinformatics initiative with the aim of standardizing the representation of gene and gene product attributes across species and databases. The project provides a controlled vocabulary of terms for describing gene product characteristics and gene product annotation data from GO Consortium members, as well as tools to access and process this data." The Ontologies describe three aspects of molecular biology- biological processes, cellular components, and molecular functions. Gene Ontology's collected tools list includes hundreds from all over the world: specialized browsers, search engines, statistical analysis and visualization tools, and many other kinds. This project began as a collaboration between three model organism databases, FlyBase (Drosophila), the Saccharomyces Genome Database and the Mouse Genome Database in 1998. Since then, the GO Consortium has grown to include many other databases, including several of the world's major repositories for plant, animal and microbial genomes. See the GO Consortium page for a full list of member organizations.
Keywords: animal, bioinformatics, collaborative, genetics, genome, genomics, ontologies, plants, taxonomy
Provider: Office of the Surgeon General and the National Human Genome Research Institute (NIH)
Descriptions: A family health history can help to identify genetic health risks. This website enables consumers to create a personal online family health history, which can then be saved to one's own computer to print or to share with other family members or health care providers. Privacy is assured- the data entered is available only to the user.
Keywords: consumer health, disease, general health, genetics
Provider: Georgetown University
Descriptions: The MCH Library develops knowledge paths, bibliographies, and other information resources. It is provided by the Mary C. Egan Maternal and Child Health Library, one of six Georgetown University libraries. This gateway site offers a compilation of maternal-child health information updated frequently, and also offers paths to information available from other websites. A Community Services Locator feature guides users to sources of support for mothers and children on the local level, in areas like child care, education and special needs, family and parenting issues, health, and financial support.
Keywords: consumer health, general health, genetics, infant, lactation, neonatal, news, portal, prenatal care, public health, spanish, wellness, women
Contents: Abstracts, archive, full text, images, journals, links to full text
Access Level: Free, Open Access
Descriptions: From this point in ScienceDirect, the user can explore a complete list of open-access journals published by Elsevier, and in the same drop-down menu, a list of subscription journals containing open-access articles.
Keywords: cell biology, genetics, immunology, life sciences, microbiology, neurosciece, parasitology, pharmacology, stem cells
Contents: blog, charts/graphs, full text, images
Access Level: Licensed, On-Site Visitor, TMC Academic User
Descriptions: Scriver’s OMMBID,updated several times a year, provides online access to the leading genetic information from renowned international experts. The site now features a researchers' blog, podcasts, the ability to limit searches to images and tables, creation of personal storage and bookmarking.
Keywords: drugs, genetics, medicine