Date: Tuesday, March 20, 2018
Time: 6:30pm – 7:30pm
Presenter: Emmanuel Onwuachi
Location: Street Level Classroom
Using PubMed tags(filters) to search for relevant articles.
Provider: Kyoto University Bioinformatics Center
Descriptions: GenomeNet is a network of database and computational services for genome research and related research areas in biomedical sciences, operated by the Kyoto University Bioinformatics Center. The service was first developed at Kyoto University as part of a group of research projects begun in 1991 under the Japanese human genome program. It includes bioinformatics tools in sequence, chemical and genome analysis; community databases dealing with cyanobacteria, bacillus subtilis, and gene expression profiles; ontologies; and more. The KEGG database, which has its own entry in this list, is a part of GenomeNet.
Keywords: biomedical research, database, genome, genomics
Descriptions: The Gene Gateway is a collection of guides and tutorials for the investigation of various aspects of genetics data and information through databases located on the Worldwide Web. Guide sections include links to the resources, and are as follows: Gene and Protein Database Guide; Bioinformatics Tools; Genetic Disorder Guide; Sample Profiles of Genes and Genetic Disorders; Chromosome Viewer; and Evaluating Medical Information on the Web.
Keywords: consumer health, faculty, federal agencies, gateway, genetics, genome, portal, research, student, U.S. Government
Provider: Johns Hopkins University School of Medicine
Contents: brief records, index, links, links to full text
Access Level: Free, Open Access, Partially Open
Descriptions: OMIM is a comprehensive, authoritative compendium of human genes and genetic phenotypes that is freely available and updated daily. The full-text, referenced overviews in OMIM contain information on all known mendelian disorders and over 12,000 genes. OMIM focuses on the relationship between phenotype and genotype. It is updated daily, and the entries contain copious links to other genetics resources. Registration required for ftp downloading on the part of nonprofit entities; commercial use/use by a commercial entity requires a license.
Keywords: diseases, genetics, genome, genomics
Provider: Netherlands BioInformatics Centre
Descriptions: NBIC is engaged in bioinformatics research and education. Its website includes free software downloads, information on databases and projects, a journal and newsletter, and secondary-level education materials.
Keywords: biomedical research, blog, conference, data analysis, DNA, genes, genome, genomics, informatics, journal, news, open source, partial open access, pharmacogenomics, research, scientist, sequencing, software
Provider: Gene Ontology Project
Contents: datasets, open-source, standards, websites
Access Level: Free, Open Access
Descriptions: "The Gene Ontology project is a major bioinformatics initiative with the aim of standardizing the representation of gene and gene product attributes across species and databases. The project provides a controlled vocabulary of terms for describing gene product characteristics and gene product annotation data from GO Consortium members, as well as tools to access and process this data." The Ontologies describe three aspects of molecular biology- biological processes, cellular components, and molecular functions. Gene Ontology's collected tools list includes hundreds from all over the world: specialized browsers, search engines, statistical analysis and visualization tools, and many other kinds. This project began as a collaboration between three model organism databases, FlyBase (Drosophila), the Saccharomyces Genome Database and the Mouse Genome Database in 1998. Since then, the GO Consortium has grown to include many other databases, including several of the world's major repositories for plant, animal and microbial genomes. See the GO Consortium page for a full list of member organizations.
Keywords: animal, bioinformatics, collaborative, genetics, genome, genomics, ontologies, plants, taxonomy