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Whole Brain Catalog

website

Provider: Whole Brain project - UC-San Diego
Descriptions: The Whole Brain Catalog is the flagship project of the Whole Brain Project at the University of California - San Diego. It is an open source, downloadable, multi-scale virtual catalog of the mouse brain and its cellular components, providing zoomable 3D views of structures and their surroundings deep inside the mouse brain. The data is also brought to life with simulation and animation. "In providing open source and collaborative tools, the Whole Brain Project allows neuroscience researchers to make new connections with collaborators and newly discovered data. Combining previously unconnected databases across a single network make possible new and exciting insights about the brain."
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GigaDB

database

Provider: GigaScience and BGI
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Access Level: ,
Descriptions: GigaDB is an open repository of datasets that support the research published in the open access BioMed Central bioinformatics journal, GigaScience. GigaDB provides a place from which to download supporting data and tools associated with papers published in GigaScience, thus facilitating the reproducibility of research. DataCite DOIs are assigned to these accompanying datasets, an identification device which serves to facilitate tracking and discoverability, and to provide additional credit to the authors who make their data publicly available.
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Allen Brain Atlas

database

Provider: Allen Institute for Brain Science
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Descriptions: "A growing collection of online public resources integrating extensive gene expression and neuroanatomical data, complete with a novel suite of search and viewing tools." Images and gene expression data are available for the mouse brain and spinal cord, and human and non-human primate brains. Excellent video tutorials  provide training in the use of the atlases and the Brain Explorer 2 software.
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